Clofarabine CAS 123318-82-1

Introduction：Basic information about Clofarabine CAS 123318-82-1, including its chemical name, molecular formula, synonyms, physicochemical properties, and safety information, etc.

Clofarabine Basic information

• Product Name: Clofarabine
• Synonyms: 2-CHLORO-2'-ARABINOFLUORO-2'-DEOXYADENOSINE;5-(6-amino-2-chloro-purin-9-yl)-4-fluoro-2-(hydroxymethyl)oxolan-3-ol;CLOFARABINE;CAFDA;2-chloro-9-(2-deoxy-2-fluoroarabinofuranosyl)adenine;2-chloro-9-(2-deoxy-2-fluoro-beta-d-arabinofuranosyl)-9h-purin-6-amin;2-chloro-9-(2-deoxy-2-fluoro-beta-d-arabinofuranosyl)adenine;Clolar
• CAS: 123318-82-1
• MF: C10H11ClFN5O3
• MW: 303.68
• EINECS: 631-422-9
• Product Categories: Antineoplastic;Anti-cancer&immunity;Pharmaceutical intermediate;CLOLAR;Bases & Related Reagents;Nucleotides;Inhibitors;Intermediates & Fine Chemicals;Pharmaceuticals
• Mol File: 123318-82-1.mol

Clofarabine Chemical Properties

• Melting point: 228-2310C
• Boiling point: 550.0±60.0 °C(Predicted)
• density: 1.4804 (estimate)
• RTECS: UD7473000
• storage temp.: 2-8°C
• solubility: DMSO: >10mg/mL
• pka: 12.56±0.70(Predicted)
• form: Powder
• color: white
• Optical Rotation: 40.9°(C=0.01g/ml DMF)
• λmax: 263nm(EtOH)(lit.)
• Merck: 14,2372
• InChI: InChI=1/C10H11ClFN5O3/c11-10-15-7(13)5-8(16-10)17(2-14-5)9-4(12)6(19)3(1-18)20-9/h2-4,6,9,18-19H,1H2,(H2,13,15,16)/t3-,4+,6-,9-/s3
• InChIKey: INHHKRVRRUIAPA-KJHIFWANSA-N
• SMILES: C12N=C(N=C(N)C=1N=CN2[C@H]1[C@@H](F)[C@H](O)[C@@H](CO)O1)Cl |&1:10,11,13,15,r|
• CAS DataBase Reference: 123318-82-1(CAS DataBase Reference)

Safety Information

• Hazard Codes: T
• Risk Statements: 25
• Safety Statements: 45
• RIDADR: UN 2811 6.1 / PGIII
• WGK Germany: 2
• HazardClass: 6.1
• HS Code: 29349990
• Storage Class: 6.1C - Combustible acute toxic Cat.3 toxic compounds or compounds which causing chronic effects
• Hazard Classifications: Acute Tox. 4 Dermal Acute Tox. 4 Inhalation Acute Tox. 4 Oral Carc. 2 Eye Irrit. 2 Skin Irrit. 2 STOT SE 3

Clofarabine Usage And Synthesis

Anti-cancer drugs

Clofarabine is a novel purine nucleoside anticancer drugs is first successfully developed by the Top10 biopharmaceutical company of the United States---Genzyme Corporation, NASDAQ: GENZ) with the trade names being “Clofarabine”. On December 28, 2004 the US food and Drug Administration (FDA) used fast-track for approval of clofarabine for application to children with refractory or relapsed acute lymphocytic leukemia. It is currently the only available drugs for the special treatment of children with acute myelogenous leukemia (ALL); it has an excellent efficacy on the treatment of leukemia with well tolerance and no unpredictable adverse reactions. It can be administrated through either administered intravenously or administered orally. This drug is the first product approved for being dedicated to the treatment of the children's leukemia in more than ten years.

Pharmacological effects

Clofarabine has also combined the advantages of fludarabine and cladribine that can inhibit both DNA polymerase as well as inhibit ribonucleotide reductase with strong anti-cancer activity against different cell lines and tumor models. Early studies have also shown that the product, when having a concentration of micromolar or less, can already effectively inhibit the proliferation of human CNS tumors, lung cancer, kidney cancer, and leukemia and melanoma cell lines. In vivo and in vitro experiments have showed that clofarabine can induce apoptosis of leukemia cells with the mechanism being the down-regulation of de-phosphorylation of BCL-2 family proteins BCL-X and MCL-1 as well as the AKT. Its inhibitory effect on the human leukemia cells K-562 is stronger than cladribine and fluorine with the IC50 being 5 nmol/L while the IC50 for cladribine and fluorine is 16 nmol/L and 460nmol/L, respectively. Preclinical and drug combination experiments have showed that clofarabine, similar as other deoxynucleotide analogs as well as other types of anti-cancer drugs such as Etoposide, can enhance the activity of the deoxycytidine kinase in normal or abnormal human lymphocytes, and therefore increasing the anti-cancer effect.

Dosage

Clofarabine belongs to the anticancer drug which affects tubulin and is mainly used for clinical treatment of the following diseases:
1. treatment of relapsed or refractory acute lymphocytic leukemia;
2. it also has efficacy in treating acute myeloid leukemia and myelodysplastic syndrome (MDS) in older patients and can be used in combination with cytarabine.
General adult dose:
1. relapsed or refractory acute lymphoblastic leukemia: suitable for the patient (1 to 21 years) should have previously received at least two kinds of treatment programs; take 52 mg/m2 daily X 5 days, have intravenous injection (more than 2 hours) until the organ get function recovery or return back to the baseline level, repeat 1 time every 2 to 6 weeks.
2. Acute myeloid leukemia and MDS: daily 52 mg/m2 × 5 days, have intravenous infusion for 1 hour; After 4 hours, administer cytarabine with 1 g(daily)/m2 X 5 days, perform intravenous infusion for 2 hours, it has positive effect for the newly diagnosed elderly patients with acute myelogenous leukemia and high-risk MDS.
Child:
It can be used for treating refractory and relapsed acute lymphocytic leukemia with the same amount for adults. For the treatment of the refractory and relapsed acute non-lymphocytic leukemia, use daily 52mg/m2 × 5 days, perform intravenous infusion (more than 2 hours) and repeat the treatment per 2-6 weeks depending on the reaction and toxicity in patients.
The above information is edited by the Chemicalbook of Dai Xiongfeng.

Adverse reactions and precautions

Common adverse reactions about clofarabine are as follows:
Blood system: leukocytes and neutropenia, thrombocytopenia, anemia.
Digestive system: loss of appetite, nausea, vomiting, abdominal pain, constipation; stomatitis, gingival bleeding, sore throat.
Nervous System: fatigue, drowsiness, headache, dizziness; anxiety, depression; irritability, excitability.
Cardiovascular System: tachycardia, hypertension, hypotension, transient systolic dysfunction of the left ventricular; the drug should be discontinued upon any causes of hypotension; it was occasionally observed in pediatric patient of capillary leak syndrome and systemic inflammatory response syndrome (SIRS) which can be prevented by administration of hormone during the 1st to 3rd day of treatment. During the medication, once the above syndrome occurs, it should be discontinued immediately and combined with concurrent support treatment. Once the condition is stabilized and the organ gets function recovery, the patients can re-initiate the administration from low dosage.
Liver toxicity: reversible liver damage, increased level of aspartate aminotransferase, alanine aminotransferase and bilirubin; hepatomegaly and jaundice.
Respiratory system: respiratory distress, coughing, pleural effusions.
Urogenital: hematuria, secondary hyperuricemia, elevated level of serum creatinine and creatine.
Other: dermatitis, erythema; muscle pain, joint pain; fever and infection.
[Note] women of childbearing age should take care of contraception during medication, lactation women should stop breastfeeding. Patients of hypotension, dehydration, liver and kidney dysfunction as well as secondary infection of bone marrow suppression should take with caution. Clofarabine may cause tumor lysis syndrome and should drawn attention.

Category

toxic substances.

Flammability and hazard characteristics

It is combustible with fire decomposition releasing toxic nitrogen oxides; fluorides and chlorides fume.

Storage characteristics

warehouse: low-temperature, dry and ventilated.

Extinguishing media

Water, carbon dioxide, dry, sandy soil.

Description

Clofarabine is a new member of the purine nucleoside antimetabolite class ofdrugs, and it was launched as an intravenous infusion for treating pediatricpatients (1–21 years old) with relapsed or refractory acute lymphoblastic leukemia(ALL) after at least two prior regimens. Adenosine-related antimetabolites, suchas cladribine and fludarabine have proven successful in treating low-grade lymphomas,chronic lymphocytic leukemia, and hairy-cell leukemia. Although structurallysimilar to cladribine and fludarabine, a key differentiator for clofarabine is the presenceof a fluorine in the C-2′ position, which renders it less susceptible to phosphorolyticcleavage of the glycosydic bond and inactivation by purine nucleosidephosphorylases. In addition, the C-2′ fluoro group improves the acid stability relativeto its predecessors. As seen with other purine nucleoside analogs, the mechanismof action of clofarabine involves intracellular phosphorylation to activetriphosphate by 2′ -deoxycytidine kinase, and subsequent inhibition of RNA reductaseand DNA polymerase a. Clofarabine is cytotoxic to rapidly proliferating andquiescent cancer cell types in vitro.The higher potency of clofarabine relative to other purine nucleoside analogs isattributed to the higher efficiency of its phosphorylation by deoxycytidine kinase, andthe longer intracellular half-life of the triphosphate metabolite (＞24 h). The chemicalsynthesis of clofarabine involves the conversion of 2-deoxy-2-β-fluoro-1,3,5-tri-O-benzoyl-1-α-D-arabinofuranose to the corresponding bromosugar with hydrogenbromide, subsequent coupling with 2-chloroadenine, and the removal of benzoylprotecting groups with catalytic sodium methoxide in methanol. The recommendedpediatric dosage of clofarabine is 52mg/m² daily, administered by i.v. infusion over2 h, for 5 consecutive days. Treatment cycles are repeated following recovery orreturn to baseline organ function, approximately every 2–6weeks.Clinicalefficacy of clofarabine was evaluated in a single-arm study involving 49 pediatricpatients, who had relapsed or failed two or more prior therapies. Fifteen patients(30.6%) demonstrated either a complete remission, a complete remission minusplatelet recovery, or a partial response. For patients experiencing complete remission,the response lasted from 43 days to ＞160 days. Adverse events associated withclofarabine were similar to other chemotherapy agents, including vomiting, nausea,febrile neutropenia, and diarrhea.

Chemical Properties

White Solid

Originator

Southern Research Institute (US)

Uses

ISecond generation purine nucleoside analog; antimetabolite that inhibits DNA synthesis and resists deamination by adenosine deaminase. Antineoplastic

Uses

Clofarabine has been used in a cell viability assay to analyze the sensitivity of the isogenic cell lines towards clofarabine. It is also used to study the interaction of anticancer drug clofarabine with human serum albumin and human α-1 acid glycoprotein.

Definition

ChEBI: A purine nucleoside analogue consisting of a 6-amino-2-chloropurin-9-yl group attached to the 1beta position of 2'-deoxy-2'-fluoro-D-arabinofuranose. It is metabolized intracellularly to the active 5'-triphosphate metabolie, which inhibits DNA synthesisis and so stops the growth of cancer cells. Clofarabine is used as an antimetabolite antineoplastic agent in the treatment of relapsed or refractory acute lymphoblastic leukaemia.

Brand name

Clolar

Biological Activity

Deoxycytidine kinase (dCK) substrate. Phosphorylated to form clofarabine triphosphate, which competes with dATP for DNA polymerase- α and - ε and potently inhibits ribonucleotide reductase (IC 50 = 65 nM). Induces apoptosis by directly altering mitochondrial transmembrane potential. Demonstrates growth inhibition and cytotoxic activity in a variety of leukemias and solid tumors.

Biochem/physiol Actions

Clofarabine is a second-generation nucleoside analog, used in cancer treatments. Clofarabine is metabolized to 5′-triphosphate and is known to block DNA synthesis. The human equilibrative nucleoside transporters (hENT1 and hENT2) and human concentrative nucleoside transporter (hCNT2 and hCNT3) mediates clofarabine transport into the cell. It also serves as a substrate for mitochondrial deoxyguanosine kinase. Clofarabine is an inhibitor of ribonucleotide reductase. It resists the phosphorolytic cleavage catalyzed by purine nucleoside phosphorylase of bacterias. Clofarabine also withstands deamination by adenosine deaminase.

Synthesis

The drugwas discovered by Ilex oncology (now Genzyme) and currentlymarketed by Genzyme [3,6]. Several routes to the synthesisof clofarabine have been published, including a processscale-up chemistry as shown in the Scheme. Treatmentof commercially available 2-deoxy-2-|?-fluoro-1,3,5-tri-O-benzoyl-1-R-D-arabinofuranose (6) with 33%HBr in aceticacid provided the bromo sugar 7 in 88% yield. The bromide7 was reacted with 2-chloroadenine (8) in optimizedmixed solvent system in the presence of calcium hydride andpotassium t-butoxide to give the desired |?-anomeric product9 in 50:1 ratio. Deprotection of the benzoyl groups with sodiummethoxide then provided clofarabine (II).

storage

Store at +4°C

References

[1] Patent: WO2011/3018, 2011, A2. Location in patent: Page/Page column 57
[2] Nucleosides, Nucleotides and Nucleic Acids, 2010, vol. 29, # 2, p. 113 - 122

Clofarabine Preparation Products And Raw materials

• Raw materials: 1234346-14-5-->N,N-Dimethylformamide-->Tetramethylammonium fluoride-->Acetic acid-->2-Chloro-9-(2-deoxy-2-fluoro-3,5-di-O-benzoyl-β-D-arabinofuranosyl)-9H-purin-6-aMine